How to merge and transcode multiple videos
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Merge & Transcode in Windows
If you have more than one source files that need to be merged and transcoded resulting in a single out put file create a batch script with the following line in it:
"PATH_TO_VLC" -vvv FILE1.EXT FILE2.EXT FILE3.EXT ETC.ETC --sout-keep --sout=#gather{} --sout=#transcode{vcodec=h264,vb=1024,scale=1,acodec=mp4a,ab=192,channels=6}:standard{access=file,mux=ts,dst=out.mpg} --sout-all
Next edit the path to vlc, input files, and transcode peramiters to meet your needs.